A. J. Gonzalez, Li Liao and Cathy H. Wu, Predicting Functional Sites in Biological Sequences Using Canonical Correlation Analysis, To Be Presented at BIOCOMP10 - The 2010 International Conference on Bioinformatics & Computational Biology, Las Vegas, Nevada, July 2010. Roger A. Craig, Jin Lu, Jinquan Luo, Lei Shi, and Li Liao. Optimizing nucleotide sequence ensembles for combinatorial protein libraries using a genetic algorithm. Nucleic Acids Research 38(2):e10 2010. A. J. Gonzalez, Li Liao, Constrained Fisher Scores Derived From Interaction Profile Hidden Markov Models Improve Protein-Protein Interaction Prediction, 1st International Conference on Bioinformatics and Computational Biology, New Orleans, Louisiana, April 2009. Roger A. Craig, Keyur Malaviya, Krishna Balasubramanian and Li Liao. Inferring functional linkage from residue level co-evolution information. The International Conference on Bioinformatics and Computational Biology (BioComp08), Las Vegas, Nevada, USA, July, 2008. Kevin McCormick, Roli Shrivastava and Li Liao. SlopeMiner: An improved method for mining subtle signals in time course microarray data. The International Frontiers of Algorithmics Workshop (FAW08). Changsha, China, June, 2008. Alvaro J Gonzalez and Li Liao, Clustering exact matches of pairwise sequence alignments by weighted linear regression. BMC Bioinformatics 2008, 9:102. Tapan Patel and Li Liao, Predicting protein-protein interaction using Fisher scores extracted from domain profiles. Proceedings of IEEE 7th International Symposium for Bioinformatics and Bioengineering (BIBE), October 2007, Boston, MA. Roger A. Craig and Li Liao, Improving Protein-Protein Interaction Prediction based on Phylogenetic Information using Least-Squares SVM. Annals of The New York Academy of Sciences. Vol. 1115, No. 1, pp. 154, 2007. Li Liao and Zhongwei Li, Correlation Between Gene Silencing Activity and Structural Features of Antisense Oligodeoxynucleotides and Target RNA. In Silico Biology, 7:0036, 2007. Roger Craig and Li Liao, Phylogenetic Tree Information Aids Supervised Learning for Predicting Protein-Protein Interaction Based on Distance Matrices. BMC Bioinformatics 2007, 8:6. Roger Craig and Li Liao, Transductive Learning with EM Algorithm to Classify Proteins Based on Phylogenetic Profiles", Int. J. Data Mining and Bioinformatics 2007, 1:337-351 Roger Craig and Li Liao, "Prediction of Antisense Oligonucleotide Efficacy Using Local and Global Structure Information With Support Vector Machines", The fifth International Conference on Machine Learning and Applications (ICMLA'06), pp. 199-204, December 2006, Orlando, Florida. Tapan Patel, Manoj Pillay, Rahul Jawa, and Li Liao, "Information of Binding Sites Improves Prediction of Protein-Protein Interaction", The fifth International Conference on Machine Learning and Applications (ICMLA'06),pp. 205-210, December 2006, Orlando, Florida. Roger Craig and Li Liao, "Protein Classification Using Transductive Learning on Phylogenetic Profiles", The 21st Annual ACM Symposium on Applied Computing: Bioinformatics Track. pp. 161-166, April, 2006, Dijon, France. Li Liao, "Hierarchical profiling, scoring and applications in bioinformatics", Advanced Data Mining Technologies in Bioinformatics, edited by Hui-Huang Hsu, Idea Group, Inc., 2006. Roger Craig and Li Liao, "Iterative Weighting of Phylogenetic Profiles Increases Classification Accuracy", The Fourth International Conference on Machine Learning and Applications (ICMLA'05), pp. 156-161, December, 2005, Los Angeles, California. Robel Kahsay, Guang Gao, and Li Liao, "Discriminating Transmembrane Proteins From Signal Peptides Using SVM-Fisher Approach", The Fourth International Conference on Machine Learning and Applications (ICMLA'05), pp. 151-155, December, 2005, Los Angeles, California. Kahsay, R., Wang, G., Gao, G., Liao, L., Dunbrack Jr., R. (2005). Quasi-Consensus based COMParison of profile hidden Markov models for protein sequences. Bioinformatics 21:2287-2293. Kahsay, R., Liao, L., Gao, G. (2005). An Improved Hidden Markov Model for Transmembrane Protein Topology Prediction and Its Applications to Complete Genomes. Bioinformatics 21:1853-1858 Kishore Narra and Li Liao, "Use of extended phylogenetic profiles with E-values and support vector machines for protein family classification", The International Journal of Computer and Information Sciences, Vol. 6, No. 1, pp. 58-63, 2005. Kahsay, R., Liao, L., Gao, G. (Nov 2004). An Improved Hidden Markov Model for Transmembrane Protein Topology Prediction. ICTAI`04 (16th IEEE International Conference on Tools with Artificial Intelligence), Boca Raton, FL, USA. Kishore Narra and Li Liao, "Using extended phylogenetic profiles and support vector machines for protein family classification", The Proceedings of the Fifth International Conference on Software Engineering, Artificial Intelligence, Networking, and Parallel/Distributed Computing (SNPD04), Beijing, China. Li Liao and William Stafford Noble, "Combining Pairwise Sequence Similarity and Support Vector Machines for Detecting Remote Protein Evolutionary and Structural Relationships", Journal of Computational Biology, 10(2003)857-868. Li Liao, Sun Kim, and Jean-Francois Tomb, "Genome Comparisons Based on Profiles of Metabolic Pathways", The Proceedings of The Sixth International Conference on Knowledge-Based Intelligent Information & Engineering Systems (KES2002), pp469-476, September 2002, Crema, Italy.
	This website was designed and developed by Robel Kahsay, Ph.D., and is maintained by Roger Craig